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Prof. Henry H N LAM's Publications


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Article


Deutsch, Eric W., Mendoza, Luis., Shteynberg, David., Farrah, Terry., Lam, Henry., Tasman, Natalie., Sun, Zhi., Nilsson, Erik., Pratt, Brian., Prazen, Bryan., Eng, Jimmy K., Martin, Daniel B., Nesvizhskii, Alexey I., "A guided tour of the Trans-Proteomic Pipeline", Proteomics. v. 10, (6), 2010, MAR, p. 1150-1159 (2010)

Srikumar, Tharan., Jeram, Stanley M., Lam, Henry., Raught, Brian., "A ubiquitin and ubiquitin-like protein spectral library", Proteomics. v. 10, (2), 2010, JAN, p. 337-342 (2010)

Lam, Henry., Deutsch, Eric W., Aebersold, Ruedi., "Artificial Decoy Spectral Libraries for False Discovery Rate Estimation in Spectral Library Searching in Proteomics", Journal of proteome research. v. 9, (1), 2010, JAN, p. 605-610 (2010)

Bodenmiller, B., Wanka, S., Kraft, C., Urban, J., Campbell, D., Pedrioli, P.G., Gerrits, B., Picotti, P., Lam, H., Vitek, O., Brusniak, M.-Y., Roschitzki, B., Zhang, C., Shokat, K.M., Schlapbach, R., Colman, "Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast", Science Signaling. v. 3, (153), 2010 (2010)

Lam, H., Aebersold, R., "Spectral library searching for peptide identification via tandem MS.", Methods in molecular biology (Clifton, N.J.). v. 604, 2010, p. 95-103 (2010)

Deutsch, E., Shteynberg, D., Lam, Henry., Sun, Z., Eng, J., Carapito, C., von Haller, P., Tasman, N., Mendoza, L., Farrah, T., Aebersold, R., "Trans Proteomic Pipeline supports and improves analysis of electron transfer dissociation datasets", Proteomics. v. 10, 2010, p. 1190-1195 (2010)

Lam, H., Aebersold, R., "Using spectral libraries for peptide identification from tandem mass spectrometry (MS/MS) data", Current protocols in protein science. (SUPP.60), 2010, p. 25.5.1-25.5.9 (2010)

Book chapter


Lam, Henry., Aebersold, Ruedi., "Spectral Library Searching for Peptide Identification via Tandem MS", Proteome Bioinformatics. /Edited by Simon J. Hubbard, Andrew R. Jones. New York, NY: Humana Press; Springer, c2010, chapter 7, p. 95-103 (2010)

Conference paper


Mendoza, L., Shteynberg, D., Slagel, J., Holstein, C., Tasman, N., Pratt, B., Lam, Henry H N., Eng, J., Nesvizhskii, A., Martin, D., Deutsch, E., Moritz, R., Aebersold, R., "New functionality for the Trans-Proteomic Pipeline: tools for analysis of proteomics data", US Human Proteome Organization 6th Annual Conference. Denver, CO, USA (2010)

 
Research