Prof. Henry H N LAM's Publications

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Article

Ye, Xueting; Yang, Yun; Zhou, Jihao; Xu, Ling; Wu, Long; Huang, Peiwu; Feng, Chun; Ke, Peng; He, An; Li, Gongqiang; Li, Yuan; Li, Yangqiu; Lam, Hei Ning; Zhang, Xinyou; Tian, Ruijun, "Combinatory strategy using nanoscale proteomics and machine learning for T cell subtyping in peripheral blood of single multiple myeloma patients", Analytica Chimica Acta, v. 1173, August 2021, article number 338672 (2021)

Yuan, Minting; Pai, Pei-Jing; Liu, Xiaofen; Lam, Hei Ning; Chan, Barbara P., "Proteomic Analysis of Nucleus Pulposus Cell-derived Extracellular Matrix Niche and Its Effect on Phenotypic Alteration of Dermal Fibroblasts", Scientific Reports, v. 8, (1), December 2017, article number 1512 (2018)

Sulaiman, Jordy Evan; Hao, Chunlin; Lam, Henry, "Specific Enrichment and Proteomics Analysis of Escherichia coli Persisters from Rifampin Pretreatment", Journal of Proteome Research, 11 October 2018 (2018)

Shao, Wenguang; Lam, Henry Hei Ning, "Tandem mass spectral libraries of peptides and their roles in proteomics research", Mass Spectrometry Reviews, v. 36, (5), September 2017, p. 634-648 (2017)

Shao, Wenguang; Zhang, Min; Lam, Henry; Lau, Stanley C. K., "A peptide identification-free, genome sequence-independent shotgun proteomics workflow for strain-level bacterial differentiation", Scientific Reports, v. 5, (14337), September 2015 (2015)

Schubert, Olga T. ; Gillet, Ludovic C. ; Collins, Ben C. ; Navarro, Pedro ; Rosenberger, George ; Wolski, Witold E. ; Lam, Henry; Amodei, Dario ; Mallick, Parag ; MacLean, Brendan ; Aebersold, Ruedi , "Building high-quality assay libraries for targeted analysis of SWATH MS data", Nature protocols, v. 10, (3), March 2015, p. 426-441 (2015)

Chen, Jianping; Chan, Pui Hei; Lam, Candy Ting Wai; Li, Zhonggui ; Lam, Kelly Yin Ching; Yao, Ping; Dong, Tina Ting Xia; Lin, Huangquan; Lam, Henry; Tsim, Karl Wah Keung, "Fruit of Ziziphus jujuba (Jujube) at Two Stages of Maturity: Distinction by Metabolic Profiling and Biological Assessment", Journal of agricultural and food chemistry, v. 63, (2), January 2015, p. 739-744 (2015)

Kim, Min-Sik ; Pinto, Sneha M. ; Getnet, Derese ; Nirujogi, Raja Sekhar ; Manda, Srikanth S. ; Chaerkady, Raghothama ; Madugundu, Anil K. ; Kelkar, Dhanashree S. ; Isserlin, Ruth ; Jain, Shobhit ; Thomas, Joji K. ; Muthusamy, Babylakshmi ; Leal-Rojas, Pamela ; Kumar, Praveen ; Sahasrabuddhe, Nandini A. ; Balakrishnan, Lavanya ; Advani, Jayshree ; George, Bijesh ; Renuse, Santosh ; Selvan, Lakshmi Dhevi N. ; Patil, Arun H. ; Nanjappa, Vishalakshi ; Radhakrishnan, Aneesha ; Prasad, Samarjeet ; Subbannayya, Tejaswini ; Raju, Rajesh ; Kumar, Manish ; Sreenivasamurthy, Sreelakshmi K. ; Marimuthu, Arivusudar ; Sathe, Gajanan J. ; Chavan, Sandip ; Datta, Keshava K. ; Subbannayya, Yashwanth ; Sahu, Apeksha ; Yelamanchi, Soujanya D. ; Jayaram, Savita ; Rajagopalan, Pavithra ; Sharma, Jyoti ; Murthy, Krishna R. ; Syed, Nazia ; Goel, Renu ; Khan, Aafaque A. ; Ahmad, Sartaj ; Dey, Gourav ; Mudgal, Keshav ; Chatterjee, Aditi ; Huang, Tai-Chung ; Zhong, Jun ; Wu, Xinyan ; Shaw, Patrick G. ; Freed, Donald ; Zahari, Muhammad S. ; Mukherjee, Kanchan K. ; Shankar, Subramanian ; Mahadevan, Anita ; Lam, Henry; Mitchell, Christopher J. ; Shankar, Susarla Krishna ; Satishchandra, Parthasarathy ; Schroeder, John T. ; Sirdeshmukh, Ravi ; Maitra, Anirban ; Leach, Steven D. ; Drake, Charles G. ; Halushka, Marc K. ; Prasad, T. S. Keshava ; Hruban, Ralph H. ; Kerr, Candace L. ; Bader, Gary D. ; Iacobuzio-Donahue, Christine A. ; Gowda, Harsha ; Pandey, Akhilesh , "A draft map of the human proteome", Nature v. 509, (7502), May 2014, p. 575+ (2014)

Rosenberger, George ; Koh, Ching Chiek ; Guo, Tiannan ; Röst, Hannes L. ; Kouvonen, Petri ; Collins, Ben C. ; Heusel, Moritz ; Liu, Yansheng ; Caron, Etienne ; Vichalkovski, Anton ; Faini, Marco ; Schubert, Olga T. ; Faridi, Pouya ; Ebhardt, H. Alexander ; Matondo, Mariette ; Lam, Henry; Bader, Samuel L. ; Campbell, David S. ; Deutsch, Eric W. ; Moritz, Robert L. ; Tate, Stephen ; Aebersold, Ruedi , "A repository of assays to quantify 10,000 human proteins by SWATH-MS", Scientific Data v. 1, article number 140031, September 2014 (2014)

Liu, Xiaofen ; Hu, Yingwei ; Pai, Pei-Jing ; Chen, Daijie ; Lam, Henry, "Label-Free Quantitative Proteomics Analysis of Antibiotic Response in Staphylococcus aureus to Oxacillin", Journal of proteome research v. 13, (3), March 2014, p. 1223-1233 (2014)

Chan, Pui Hei Nicholas; Zhang, Wendy L.; Lau, Chungho; Cheung, Chi Yuen; Keun, Hector C.; Tsim, Karl Wah Keung; Lam, Henry H N, "Metabonomic Analysis of Water Extracts from Different Angelica Roots by ¹H-Nuclear Magnetic Resonance Spectroscopy", Molecules, v. 19, (3), 2014, p. 3460-3470 (2014)

Chalkley, Robert J., Bandeira, Nuno., Chambers, Matthew C., Clauser, Karl R., Cottrell, John S., Deutsch, Eric W., Kapp, Eugene A., Lam, Henry H. N., McDonald, W. Hayes., Neubert, Thomas A., Sun, Rui-Xiang., "Proteome Informatics Research Group (iPRG)_2012: A Study on Detecting Modified Peptides in a Complex Mixture", Molecular & cellular proteomics. v. 13, (1), January 2014, p. 360-371 (2014)

Picott, P., Clément-Ziza, M., Lam, Henry H N., Campbell, D.S., Schmidt, A., Deutsch, E.W., Röst, H., Sun, Z., Rinner, O., Reiter, L., Shen, Q., Michaelson, J.J., Frei, A., Alberti, S,., Kusebauch, U., Wol, "A Complete Mass-spectrometric Map of the Yeast Proteome Applied to Quantitative Trait Analysis", Nature. v.494, (7436), 2013, Feb, p. 266-270 (2013)

Zhan, Janis Ya-Xian., Zhang, Wendy Li., Zheng, Ken Yu-zhong., Zhu, Kevin Yue., Chen, Jian-ping., Chan, Pui-Hei., Dong, Tina Ting-xia., Choi, Roy Chi-yan., Lam, Henry., Tsim, Karl Wah-keung., Lau, David Tai-wai., "Chemical changes of Angelicae Sinensis Radix and Chuanxiong Rhizoma by wine treatment: chemical profiling and marker selection by gas chromatography coupled with triple quadrupole mass spectrometry", Chinese medicine. v. 8, (12), June 2013 (2013)

Shao, Wenguang., Lam, Henry., "Denoising Peptide Tandem Mass Spectra for Spectral Libraries: A Bayesian Approach", Journal of proteome research. v. 12, (7), 2013, July, p. 3223-3232 (2013)

Hu, Yingwei., Lam, Henry., "Expanding Tandem Mass Spectral Libraries of Phosphorylated Peptides: Advances and Applications", Journal of proteome research. v. 12, (12), December 2013, p. 5971-5977 (2013)

Wang, J. ; Lam, H., "Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets", Bioinformatics v. 29, (19), 2013, p. 2469-2476 (2013)

Onder, O., Shao, W., Kemps, B., Lam, Henry H N., Brisson, D., "Identifying Sources of Tick Blood Meals Using Unidentified Tandem Mass Spectral Libraries", Nature Communications. v. 4, 2013, article number 1746 (2013)

Shao, W.; Zhu, K.; Lam, H., "Refining similarity scoring to enable decoy-free validation in spectral library searching", Proteomics. v. 13, (22), 2013, p. 3273-3283 (2013)

Chan, Pui Hei., Zheng, Ken Y. Z., Tsim, Karl W. K., Lam, Henry., "Metabonomic analysis of water extracts from Chinese and American ginsengs by H-1 nuclear magnetic resonance: identification of chemical profile for quality control", Chinese medicine. v. 7, November 2012 (2012)

Lam, Henry., "Spectral library searching for peptide identification in proteomics", Statistics and Its Interface. v. 5, (1), 2012, p. 39-46 (2012)

Hu, Y., Li, Y., Lam, H., "A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries", Proteomics. v. 11, (24), 2011, Dec, p. 4702-4711 (2011)

Schmidt, Alexander., Beck, Martin., Malmstroem, Johan., Lam, Henry., Claassen, Manfred., Campbell, David., Aebersold, Ruedi., "Absolute quantification of microbial proteomes at different states by directed mass spectrometry", Molecular Systems Biology. v. 7, (510), July 2011 (2011)

Lam, Henry., Aebersold, Ruedi., "Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics", Methods. v. 54, (4), August 2011, p. 424-431 (2011)

Lam, Henry H. N. , "Building and searching tandem mass spectral libraries for peptide identification", Molecular and Cellular Proteomics v.10,(12), 2011, December, pre-published article number R111.008565 (2011)

Baumgardner, Lydia Ashleigh., Shanmugam, Avinash Kumar., Lam, Henry., Eng, Jimmy K., Martin, Daniel B., "Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration", Journal of proteome research. v. 10, (6), June 2011, p. 2882-2888 (2011)

Lam, Henry., "Spectral archives: a vision for future proteomics data repositories", Nature Methods. v. 8, (7), July 2011, p. 546-548 (2011)

Zhang, X., Li, Y., Shao, W., Lam, H., "Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis", Proteomics. v. 11, (6), 2011, p. 1075-1085 (2011)

Deutsch, Eric W., Mendoza, Luis., Shteynberg, David., Farrah, Terry., Lam, Henry., Tasman, Natalie., Sun, Zhi., Nilsson, Erik., Pratt, Brian., Prazen, Bryan., Eng, Jimmy K., Martin, Daniel B., Nesvizhskii, Alexey I., "A guided tour of the Trans-Proteomic Pipeline", Proteomics. v. 10, (6), 2010, MAR, p. 1150-1159 (2010)

Srikumar, Tharan., Jeram, Stanley M., Lam, Henry., Raught, Brian., "A ubiquitin and ubiquitin-like protein spectral library", Proteomics. v. 10, (2), 2010, JAN, p. 337-342 (2010)

Lam, Henry., Deutsch, Eric W., Aebersold, Ruedi., "Artificial Decoy Spectral Libraries for False Discovery Rate Estimation in Spectral Library Searching in Proteomics", Journal of proteome research. v. 9, (1), 2010, JAN, p. 605-610 (2010)

Bodenmiller, B., Wanka, S., Kraft, C., Urban, J., Campbell, D., Pedrioli, P.G., Gerrits, B., Picotti, P., Lam, H., Vitek, O., Brusniak, M.-Y., Roschitzki, B., Zhang, C., Shokat, K.M., Schlapbach, R., Colman, "Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast", Science Signaling. v. 3, (153), 2010 (2010)

Lam, H., Aebersold, R., "Spectral library searching for peptide identification via tandem MS.", Methods in molecular biology (Clifton, N.J.). v. 604, 2010, p. 95-103 (2010)

Deutsch, E., Shteynberg, D., Lam, Henry., Sun, Z., Eng, J., Carapito, C., von Haller, P., Tasman, N., Mendoza, L., Farrah, T., Aebersold, R., "Trans Proteomic Pipeline supports and improves analysis of electron transfer dissociation datasets", Proteomics. v. 10, 2010, p. 1190-1195 (2010)

Lam, H., Aebersold, R., "Using spectral libraries for peptide identification from tandem mass spectrometry (MS/MS) data", Current protocols in protein science. (SUPP.60), 2010, p. 25.5.1-25.5.9 (2010)

Sherwood, Carly A., Eastham, Ashley., Lee, Lik Wee., Peterson, Amelia., Eng, Jimmy K., Shteynberg, David., Mendoza, Luis., Deutsch, Eric W., Risler, Jenni., Tasman, Natalie., Aebersold, Ruedi., Lam, Henry., Martin, , "MaRiMba: A Software Application for Spectral Library-Based MRM Transition List Assembly", Journal of proteome research. v. 8, (10), 2009, OCT, p. 4396-4405 (2009)

Picotti, Paola ; Lam, Henry; Campbell, David ; Deutsch, Eric W. ; Mirzaei, Hamid ; Ranish, Jeff ; Domon, Bruno ; Aebersold, Ruedi , "A database of mass spectrometric assays for the yeast proteome", Nature Methods, v. 5, (11), 2008, p. 913-914 (2008)

Lam, Henry., Deutsch, Eric W., Eddes, James S., Eng, Jimmy K., Stein, Stephen E., Aebersold, Ruedi., "Building consensus spectral libraries for peptide identification in proteomics", Nature Methods. v. 5, (10), 2008, OCT, p. 873-875 (2008)

Deutsch, E.W., Lam, H., Aebersold, R., "Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics", Physiological genomics. v. 33, (1), 2008, p. 18-25 (2008)

Deutsch, E.W., Lam, H., Aebersold, R., "PeptideAtlas: A resource for target selection for emerging targeted proteomics workflows", EMBO reports. v. 9, (5), 2008, p. 429-434 (2008)

Bodenmiller, Bernd., Campbell, David., Gerrits, Bertran., Lam, Henry., Jovanovic, Marko., Picotti, Paola., Schlapbach, Ralph., Aebersold, Ruedi., "PhosphoPep - A database of protein phosphorylation sites in model organisms", Nature Biotechnology. 26(12), 1339-1340 (2008)

Lam, H., Deutsch, E.W., Eddes, J.S., Eng, J.K., King, N., Stein, S.E., Aebersold, R., "Development and validation of a spectral library searching method for peptide identification from MS/MS", Proteomics. v. 7, (5), 2007, p. 655-667 (2007)

Bodenmiller, B., Malmstrom, J., Gerrits, B., Campbell, D., Lam, H., Schmidt, A., Rinner, O., Mueller, L.N., Shannon, P.T., Pedrioli, P.G., Panse, C., Lee, H.-K., Schlapbach, R., Aebersold, R., "PhosphoPep - A phosphoproteome resource for systems biology research in Drosophila Kc167 cells", Molecular Systems Biology. v. 3, 2007, article number 139 (2007)

Mazzola, PG., Lam, H., Kavoosi, M., Haynes, CA., Pessoa, A., Penna, TCV., Wang, DIC., Blankschtein, D., "Affinity-tagged green fluorescent protein (GFP) extraction from a clarified E-coli cell lysate using a two-phase aqueous micellar system", Biotechnology and bioengineering. v. 93, (5), April 2006, p. 998-1004 (2006)

Lam, H., Kavoosi, M., Haynes, CA., Wang, DIC., Blankschtein, D., "Affinity-enhanced protein partitioning in decyl beta-D-glucopyranoside two-phase aqueous micellar systems", Biotechnology and bioengineering. v. 89, (4), February 2005, p. 381-392 (2005)

Rangel-Yagui, CO., Lam, H., Kamei, DT., Wang, DIC., Pessoa, A., Blankstein, D., "Glucose-6-phosphate dehydrogenase partitioning in two-phase aqueous mixed (nonionic/cationic) micellar systems", Biotechnology and bioengineering. v. 82, (4), May 2003, p. 445-456 (2003)

Book chapter

Lam, Henry., Aebersold, Ruedi., "Spectral Library Searching for Peptide Identification via Tandem MS", Proteome Bioinformatics. /Edited by Simon J. Hubbard, Andrew R. Jones. New York, NY: Humana Press; Springer, c2010, chapter 7, p. 95-103 (2010)

Conference paper

Sulaiman, Jordy Evan; Lam, Hei Ning, "Time-Course Proteome Profiling of Filamentous β-lactam Persisters during Antibiotic Treatment and Resuscitation", 8th Asia-Oceana Mass Spectrometry Conference, AOMSC 2020, University of Macau, 3-9 January 2020 (2020)

Sulaiman, jordy evan; Hao, chunlin; Lam, henry, "Deep Quantitative Proteomics Analysis of the Escherichia coli Persisters", 28th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Madrid, Spain, 21-24 April 2018 (2018)

Hao, Chunlin; Lam, Henry Hei Ning, "Proteome-wide Quantitative Profiling of Mis-incorporation of Selenocysteine into Proteins by LC-MS Based Shotgun Proteomics", The 64th ASMS Annual Conference, San Antonio, Texas, U.S., 2016, p. 125-125 (2016)

Hu, Yingwei., Lam, Henry., "Expanding spectral libraries of phosphorylated peptides: Progress in coverage and accuracy", Human Proteome Organization (HUPO) 11th Annual World Congress. Boston, MA, USA (2012)

Wu, W.K.H., Chung, A.C.S., Lam, H.H.N., "Multi-resolution LC-MS images alignment using dynamic time warping and Kullback-Leibler distance", Proceedings - International Conference on Image Processing. 2012, p. 1681-1684 (2012)

Chan, Pui Hei Nicholas., Tsim, Karl W.K., Lam, Henry., "1H-NMR metabonomics analysis of Danggui Buxue Tang effects in HEK293T kidney cell lines", China Human Proteome Organization (CNHUPO) 7th Annual Congress. Hangzhou, China, 2011 (2011)

Shao, Wenguang., Lam, Henry., "A novel de-noising method for spectral library in peptide identification from tandem mass spectrometry", China Human Proteome Organization (CNHUPO) 7th Annual Congress. Hangzhou, China, 2011 (2011)

Hu, Yingwei., Lam, Henry., "Identification of peptides with single amino acid polymorphisms by using semi-empirical MS/MS spectral library", China Human Proteome Organization (CNHUPO) 7th Annual Congress. Hangzhou, China, 2011 (2011)

Shteynberg, D., Deutsch, E., Chu, C., Kusebauch, U., Stevens, J., Sun, Z., Swearingen, K., Lam, Henry., Moritz, R., "RTCalc and RTCatalog: Open-source software tools for prediction and cataloging of sequence specific retentions of peptides on liquid chromatography systems", Annual Conference of the American Society of Mass Spectrometry (ASMS). Denver, CO, USA, 2011 (2011)

Martens, L., Askenazi, M., Bandeira, N., Chalkley, R., Clauser, K., Deutsch, E., Lam, Henry., Mcdonald, W., Neubert, T., Rudnick, P., "iPRG 2011: A study on the identification of electron transfer dissociation (ETD) mass spectra", Annual Conference of the American Society of Mass Spectrometry (ASMS). Denver, CO, USA, 2011 (2011)

Shteynberg, D., Deutsch, E., Lam, Henry., Fermin, D., Sun, Z., Tasman, N., Mendoza, L., Moritz, R., Aebersold, R., Nesvizhskii, A., "iProphet: Improved statistical validation of peptide and protein identifications in shotgun proteomics", Annual Conference of the American Society of Mass Spectrometry (ASMS). Denver, CO, USA, 2011 (2011)

Mendoza, L., Shteynberg, D., Slagel, J., Holstein, C., Tasman, N., Pratt, B., Lam, Henry H N., Eng, J., Nesvizhskii, A., Martin, D., Deutsch, E., Moritz, R., Aebersold, R., "New functionality for the Trans-Proteomic Pipeline: tools for analysis of proteomics data", US Human Proteome Organization 6th Annual Conference. Denver, CO, USA (2010)

Shao, Wenguang., Zhang, Xin., Lam, Henry H N., "A Bayesian approach to distinguish signal and noise peaks in peptide tandem mass spectra", Human Proteome Organization 6th Annual Conference. Toronto, Canada (2009)

Ferrah, T., Deutsch, E., Shteynberg, D., Campbell, D., Lam, Henry., Sun, Z., Omenn, G., Aebersold, R., "A high quality human plasma proteome available in the PeptideAtlas", Annual Conference, American Society of Mass Spectrometry. Philadelphia, PA (2009)

Farrah, T., Deutsch, E., Zhang, N., Shteynberg, D., Lam, Henry H N., Campbell, D., Tasman, N., Sun, Z., Mendoza, L., Omenn, G., Aebersold, R., "A human plasma proteome in the PeptideAtlas with estimated protein concentrations", Human Proteome Organization 6th Annual Conference. Toronto, Canada (2009)

Zhang, Xin., Shao, Wenguang., Lam, Henry., "A systematic investigation on the improvement in sensitivity of spectral library searching over sequence database searching in proteomics", Annual Conference, American Society of Mass Spectrometry. Philadelphia, PA (2009)

Srikumar, T., Jeram, S., Pedrioli, P., Lam, Henry H N., Raught, B., "Identification of Ub/Ubl chains in an integrated mass spectrometry/SpectraST/SUMmOn-based work-flow", Human Proteome Organization 6th Annual Conference. Toronto, Canada (2009)

Srikumar, T., Jeram, S., Pedrioli, P., Lam, Henry H N., Raught, B., "Identification of Ub/Ubl chains using an integrated mass spectrometry/SpectraST/SUMmOn-based work-flow", International Mass Spectrometry Conference, Bremen, Germany. 2009 (2009)

Campbell, D., Deutsch, E., Lam, Henry., Picotti, P., Aebersold, R., "Improved support for targeted proteomics workflows in PeptideAtlas", Annual Conference, US Human Proteome Organization. San Diego, CA, USA (2009)

Mendoza, L., Shteynberg, D., Tasman, N., Pratt, B., Eng, J., Lam, Henry., Nesvizhskii, A., Deutsch, E., Aebersold, R., "New functionality for the Trans-Proteomic Pipeline: tools for the analysis of proteomics data", Annual Conference, American Society of Mass Spectrometry. Philadelphia, PA (2009)

Chan, Pui Hei Nicholas., Choi, Chi Yan., Chan, Kar Lun Gallant., Tsim, Karl W K., Lam, Henry H N., "Quality control of ginseng by 1H NMR metabolic profiling", International Conference on Resource Development of Chinese Medicines from Northwestern China. Hong Kong, China (2009)

Zhang, N., Deutsch, E., Lam, Henry H N., Aebersold, R., "Absolute protein quantification estimated by spectral counting using large datasets in PeptideAtlas", Annual Conference of the American Society of Mass Spectrometry (ASMS), Denver, CO, USA. 2008 (2008)

Mendoza, L., Tasman, J., Shteynberg, D., Eddes, J., Zhang, N., Wong, C., Pratt, B., Lam, Henry., Eng, J., Deutsch, E., Aebersold, R., "New developments for open-source shotgun proteomics analysis with the Trans-Proteomic Pipeline", World Congress, Human Proteome Organization. Amsterdam, the Netherlands (2008)

Deutsch, E., Lam, Henry H N., Aebersold, R., "PeptideAtlas: Resource for target selection for emerging targeted proteomics workflows", US Human Proteome Organization (USHUPO) 4th Annual Conference, Bethesda, MD, USA. 2008 (2008)

Campbell, D., Deutsch, E., Lange, V., Picotti, P., King, N., Letarte, S., Lam, Henry H N., Zhang, N., Aebersold, R., "The PeptideAtlas as a tool for targeted proteomics", Annual Conference of the American Society of Mass Spectrometry (ASMS), Denver, CO, USA. 2008 (2008)

Shteynberg, D., Nesvizhskii, A., Deutsch, E., Lam, Henry H N., Aebersold, R., "iProphet: A new tool for combining PeptideProphet results from multiple search engines improves spectrum validation", Annual Conference of the American Society of Mass Spectrometry (ASMS), Denver, CO, USA. 2008 (2008)

Shteynberg, D., Deustch, E., Lam, Henry., Aebersold, R., Nesvizhskii, A., "iProphet: improved validation of peptide identification in shotgun proteomics", World Congress, Human Proteome Organization. Amsterdam, the Netherlands (2008)

Lam, Henry H N., Deutsch, E., Eddes, J., Eng, J., King, N., Stein, S., Aebersold, R., "Development of a spectral library building tool and re-analysis of Human Plasma PeptideAtlas datasets using spectral searching", US Human Proteome Organization (USHUPO) 3rd Annual Conference, Seattle, WA. 2007 (2007)

Lam, Henry H N., Deutsch, E., Shteynberg, D., Zhang, N., Stein, S., Aebersold, R., "Encoding the observed human plasma proteome in spectral libraries", Human Proteome Organization (HUPO) 6th Annual World Congress, Seoul, Korea. 2007 (2007)

Lam, Henry H N., Deutsch, E., Eddes, J., Aebersold, R., "Estimating false discovery rates in spectral searching using decoy spectral libraries", Human Proteome Organization (HUPO) 6th Annual World Congress, Seoul, Korea. 2007 (2007)

King, N., Deutsch, E., Eng, J., Ranish, J., Raught, B., Eddes, J., Nesvizhskii, A., Mallick, P., Martin, D., Flory, M., Lee, H., Lam, Henry H N., Aebersold, R., "Annotation of the yeast Proteome with PeptideAtlas", American Society of Mass Spectrometry Annual Conference (ASMS), Seattle, WA. 2006 (2006)

Lam, Henry H N., Deutsch, E., Eddes, J., Eng, J., King, N., Yang, S., Roth, J., Kilpatrick, L., Neta, P., Stein, S., Aebersold, R., "SpectraST: An open-source MS/MS spectra-matching search tool for targeted proteomics", American Society of Mass Spectrometry Annual Conference (ASMS), Seattle, WA. 2006 (2006)

Deutsch, E., Eddes, J., Eng, J., King, N., Lam, Henry H N., Campbell, D., Loevenich, S., Mallick, P., Martin, D., Mendoza, L., Nesvizhiskii, A., Ranish, J., Raught, B., Shteynberg, D., Tasman, J., Zhang, N., "The PeptideAtlas Project", International Symposium of the Institute for Systems Biology, Seattle, WA. 2006 (2006)

Lam, Henry H N., Kavoosi, M., Haynes, C.A., Wang, D.I.C., Blankschtein, D., "Affinity-enhanced protein partitioning in decyl beta-D-glucopyranoside two-phase aqueous micellar systems", American Institute of Chemical Engineers (AIChE) Annual Meeting, Austin, TX. 2004 (2004)