Prof. Angela R H WU's Publications
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Article
Liu, Shixuan; Mark A. Krasnow; James E. Ferrell Jr.; Jing, Qiuyu; Wu, Angela Ruohao; Yang, Jinxurong; Ming, Jingsi; Wang, Gefei; Yang, Can; Zhao, Jia, "An organism-wide atlas of hormonal signaling based on the mouse lemur single-cell transcriptome", nature communications, v. 15, (1), March 2024, article number 2188 (2024) 
Feng, Xiaohan; Wu, Zehaoyu; Cheng, Kwan Wai; Xiang, Yang; Sugimura, Ryohichi; Lin, Xuyao; Wu, Angela Ruohao, "Reversibly-bonded microfluidic devices for stable cell culture and rapid, gentle cell extraction", Lab on a Chip, v. 24, 14, July 2024, p. 3546-3555 (2024)
Wang, Hao; Xiao, Hongxiu; Feng, Buhan; Lan, Yi; Fung, Cheuk Wang; Zhang, Huan; Yan, Guoyong; Lian, Chao; Zhong, Zhaoshan; Li, Jing; Wang, Minxiao; Wu, Angela Ruohao; Li, Chaolun; Qian, Peiyuan, "Single-cell RNA-seq reveals distinct metabolic “microniches” and close host-symbiont interactions in deep-sea chemosynthetic tubeworm", Science Advances, v. 10, (30), July 2024, article number eadn3053, p. 1-16 (2024)
Li, Jiarui; Jing, Qiuyu; Li, Jie; Hua, Mingxi; Di, Lin; Song, Chuan; Huang, Yanyi; Wang, Jianbin; Chen, Chen; Wu, Angela Ruohao, "Assessment of microbiota in the gut and upper respiratory tract associated with SARS-CoV-2 infection", Microbiome, v. 11, (1), March 2023, article number 38 (2023)
Wang, Gefei; Zhao, Jia; Yan, Yan; Wang, Yang; Wu, Angela Ruohao; Yang, Can, "Construction of a 3D whole organism spatial atlas by joint modelling of multiple slices with deep neural networks", Nature Machine Intelligence, v. 5, (11), November 2023, p. 1200-1213 (2023)
Jiang, Bojing; Tan, Sin Yen; Fang, Shiyu; Feng, Xiaohan; Park, Byung Min; Fok, Hong Kiu Francis; Yang, Zhongguang; Wang, Ri; Kou, Songzi; Wu, Angela Ruohao; Sun, Fei, "Designed Multifunctional Spider Silk Enabled by Genetically Encoded Click Chemistry", Advanced Functional Materials, June 2023, article number 2304143 (2023)
Li, Dian; He, Wei; Lin, Xuyan; Cui, Xiaodong; Nagl, Stefan; Wu, Angela Ruohao; Kwok, Ryan T. K.; Wu, Renhua; Tang, Benzhong, "Enzyme-free photothermally amplified fluorescent immunosorbent assay (PAFISA) for sensitive cytokine quantification", Aggregate, v. 4, (6), December 2023, article number e384 (2023)
Mu, Quanhua; Chai, Ruichao; Pang, Bo; Yang, Yingxi; Liu, Hanjie; Zhao, Zheng; Bao, Zhaoshi; Song, Dong; Zhu, Zhihan; Yan, Mengli; Jiang, Biaobin; Mo, Zongchao; Tang, Jihong; Chan, Kaitlin Hao Yi; Loi, Danson Shek Chun; Tam, Sindy Sing Ting; Wu, Angela Ruohao; Iavarone, Antonio; Nam, Do-Hyun; Jiang, Tao; Wang, Jiguang, "Identifying predictors of glioma evolution from longitudinal sequencing", Science translational medicine, v. 15, (716), October 2023, article number eadh4181 (2023)
Wan, Xiaomeng; Xiao, Jiashun; Tam, Sindy Sing Ting; Cai, Mingxuan; Sugimura, Ryohichi; Wang, Yang; Wan, Xiang; Lin, Zhixiang; Wu, Angela Ruohao; Yang, Can, "Integrating spatial and single-cell transcriptomics data using deep generative models with SpatialScope", Nature Communications, v. 14, (1), November 2023, article number 7848 (2023)
Chao, Yiming; Xiang, Yang; Xiao, Jiashun; Zheng, Weizhong; Ebrahimkhani, Mo R.; Yang, Can; Wu, Angela Ruohao; Liu, Pentao; Huang, Yuanhua; Sugimura, Ryohichi, "Organoid-based single-cell spatiotemporal gene expression landscape of human embryonic development and hematopoiesis", Signal Transduction and Targeted Therapy, v. 8, (1), June 2023, article number 230 (2023)
Fung, Cheuk Wang; Chau, Kin Yung; Tong, Daniel Chun Sang; Knox, Claire Elizabeth Sisley; Tam, Sindy Sing Ting; Tan, Sin Yen; Loi, Danson Shek Chun; Leung, Ziuwin; Xu, Ying; Lan, Yi; Qian, Pei-Yuan; Chan, Kit Yu Karen; Wu, Angela Ruohao, "Parentage influence on gene expression under acidification revealed through single-embryo sequencing", Molecular Ecology, October 2023 (2023)
Tan, Sin Yen; Feng, Xiaohan; Cheng, Kwan Wai; Wu, Angela Ruohao, "Vascularized Human Brain Organoid On-Chip (forthcoming)", Lab on a Chip, 2023 (2023)
The Tabula Microcebus Consortium; Zhao, Jia; Wang, Gefei; Wang, Yang; Jing, Qiuyu; Yang, Jinxurong; Wu, Angela Ruohao, "Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets", Nature Computational Science, v. 2, (5), May 2022 (2022)
Huerne, Katherine; Palmour, Nicole; Wu, Angela Ruohao; Beck, Stephan; Berner, Alison; Siebert, Reiner; Joly, Yann, "Auditing the Editor: A Review of Key Translational Issues in Epigenetic Editing", CRISPR Journal, v. 5, (2), April 2022, p. 203-212 (2022)
Herbig, Maik; Isozaki, Akihiro; Di Carlo, Dino; Guck, Jochen; Nitta, Nao; Damoiseaux, Robert; Kamikawaji, Shogo; Suyama, Eigo; Shintaku, Hirofumi; Wu, Angela Ruohao; Nikaido, Itoshi; Goda, Keisuke, "Best practices for reporting throughput in biomedical research", Nature Methods, v. 19, (6), June 2022, p. 633-634 (2022)
Fung, Cheuk Wang; Zhou, Shaopu; Zhu, Han; Wei, Xiuqing; Wu, Zhenguo; Wu, Angela Ruohao, "Cell fate determining molecular switches and signaling pathways in Pax7-expressing somitic mesoderm", Cell Discovery, v. 8, (1), June 2022, article number 61 (2022)
Jing, Qiuyu; Leung, Chi Hung Czarina; Wu, Ruohao Angela, "Cell-Free DNA as Biomarker for Sepsis by Integration of Microbial and Host Information", Clinical Chemistry, June 2022, article number hvac097 (2022)
Ming, Jingsi; Lin, Zhixiang; Zhao, Jia; Wan, Xiang; The Tabula Microebus Consortium; Yang, Can; Wu, Angela Ruohao, "FIRM: Flexible integration of single-cell RNA-sequencing data for large-scale multi-tissue cell atlas datasets", Briefings in Bioinformatics, May 2022, article number bbac167 (2022)
Li, Jiarui; Du, Pengcheng; Yang, Lijiang; Zhang, Ju; Song, Chuan; Chen, Danying; Song, Yangzi; Ding, Nan; Hua, Mingxi; Han, Kai; Song, Rui; Xie, Wen; Chen, Zhihai; Wang, Xianbo; Liu, Jingyuan; Xu, Yanli; Gao, Guiju; Wang, Qi; Pu, Lin; Di, Lin; Yue, Jinglin; Han, Junyan; Zhao, Xuesen; Yan, Yonghong; Yu, Fengting; Wu, Angela Ruohao; Zhang, Fujie; Gao, Yi Qin; Huang, Yanyi; Wang, Jianbin; Zeng, Hui; Chen, Chen, "Two-step fitness selection for intra-host variations in SARS-CoV-2", Cell Reports, v. 38, (2), January 2022, article number 110205 (2022)
Zhang, Ju; Ding, Nan; Ren, Lili; Song, Rui; Chen, Danying; Zhao, Xuesen; Chen, Budong; Han, Junyan; Li, Jiarui; Song, Yangzi; Di, Lin; Han, Kai; Yu, Fengting; Xie, Ruming; Chen, Zhihai; Xie, Wen; Liu, Jingyuan; Cen, Shan; Bi, Yuhai; Wu, Angela Ruohao; Zhang, Fujie; Chen, Chen; Zeng, Hui, "COVID-19 reinfection in the presence of neutralizing antibodies", National Science Review, v. 8, (4), April 2021, article number nwab006 (2021)
Loi, Danson S. C.; Yu, Lei; Wu, Angela Ruohao, "Effective ribosomal RNA depletion for single-cell total RNA-seq by scDASH", PeerJ, v. 9, January 2021, article number 10717 (2021)
Agbor-Enoh, Sean; Oellerich, Michael; Wu, Angela Ruohao; Halloran, Philip F; De Vlaminck, Iwijn; Keller, Michael, "Molecular Approaches to Transplant Monitoring; Is the Horizon Here?", Clinical chemistry, v. 67, (11), November 2021, p. 1443-1449 (2021)
Olivieri, Julia Eve; Dehghannasiri, Roozbeh; Wang, Peter; Jang, SoRi; De Morree, Antoine; Tan, Serena Y.; Ming, Jingsi; Wu, Angela Ruohao; Quake, Stephan R.; Krasnow, Mark A.; Salzman, Julia; Tabula Sapiens, Consortium, "RNA Splicing Programs Define Tissue Compartments And Cell Types At Single Cell Resolution", eLife, v. 10, September 2021, article number e70692 (2021)
Wang, Xinlei; Yu, Lei; Wu, Angela Ruohao, "The effect of methanol fixation on single-cell RNA sequencing data", BMC Genomics, v. 22, (1), December 2021, article number 420 (2021)
Wu, Angela Ruohao, "Genomic surveillance of COVID-19 cases in Beijing", Nature Communications, v. 11, (1), 30 October 2020, article number 5503 (2020)
Chen, Chen; Li, Jizhou; Di, Lin; Jing, Qiuyu; Du, Pengcheng; Song, Chuan; Li, Jiarui; Li, Qiong; Cao, Yunlong; Xie, X. Sunney; Wu, Angela Ruohao; Zeng, Hui; Huang, Yanyi; Wang, Jianbin, "MINERVA: A Facile Strategy for SARS-CoV-2 Whole-Genome Deep Sequencing of Clinical Samples", Molecular Cell, v. 80, (6), December 2020, p. 1123-1134 (2020)
Fung, Cheuk Wang; Chan, Shek Nga; Wu, Angela Ruohao, "Microfluidic single-cell analysis—Toward integration and total on-chip analysis", Biomicrofluidics, v. 14, (2), March 2020, article number 021502 (2020)
Wang, Jianbin; Wu, Angela Ruohao, "A head-to-toe makeover for classical sequencing-by-synthesis helps users to squeeze more out of each base", National Science Review, v. 6, (1), January 2019, p. 3-4 (2019)
Zhang, Xiannian; Peng, Yang; Li, Chunmei; Li, Qianxi; Yu, Zhilong; Pang, Yuhong; Wu, Angela Ruohao; Huang, Yan Yi; Li, Hang, "Genomic Heterogeneity and Branched Evolution of Early Stage Primary Acral Melanoma Shown by Multiregional Microdissection Sequencing", Journal of Investigative Dermatology, 2019 (2019)
Koh, Winston Lian Chye; Wu, Angela Ruohao; Penland, Lolita; Treutlein, Barbara; Neff, Norma F.; Mantalas, Gary L.; Blumenfeld, Yair J.; El-Sayed, Yasser Yehia; Stevenson, David K.M.D.; Shaw, Gary M.S.; Quake, Stephen R., "Single Cell Transcriptomes Derived from Human Cervical and Uterine Tissue during Pregnancy", Advanced Biosystems, May 2019, article number 1800336 (2019)
Wu, Angela Ruohao; Wang, Jianbin; Streets, Aaron M.; Huang, Yanyi, "Single-Cell Transcriptional Analysis", Annual Review of Analytical Chemistry, v. 10, June 2017, p. 439-462 (2017)
Wu, Angela R.; Yu, Lei, "There's Plenty of Room at the Bottom of a Cell", CHEMICAL ENGINEERING PROGRESS, v.113, (10), October 2017, p. 47-51 (2017)
Wu, Angela Ruohao; Quake, Stephen R., "Microfluidics technologies for low cell number chromatin immunoprecipitation", Cold Spring Harbor Protocols, v. 2016, (4), April 2016, p. 373-384 (2016)
Padovan-Merhar, Olivia; Nair, Gautham P.; Biaesch, Andrew G.; Mayer, Andreas; Scarfone, Steven; Foley, Shawn W.; Wu, Angela Ruohao; Churchman, L. Stirling; Singh, Abhyudai; Raj, Arjun, "Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms", Molecular Cell, v. 58, no. 2, 16 April 2015, p. 339-352 (2015)
Wu, Angela Ruohao; Neff, Norma F.; Kalisky, Tomer; Dalerba, Piero; Treutlein, Barbara; Rothenberg, Michael E.; Mburu, Francis M.; Mantalas, Gary L.; Sim, Sopheak; Clarke, Michael F. Clarke; Quake, Stephen R., "Quantitative assessment of single-cell RNA-sequencing methods", Nature Methods, v. 11, (1), 2014, p. 41-46 (2014)
Treutlein, Barbara; Brownfield, Doug G.; Wu, Angela Ruohao; Neff, Norma F.; Mantalas, Gary L.; Espinoza, F. Hernan; Desai, Tushar J.; Krasnow, Mark A.; Quake, Stephen R., "Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq", Nature, v. 509, no. 7500 (2014) p. 371-375 (2014)
Wu, Angela Ruohao; Kawahara, Tiara L.A.; Rapicavoli, Nicole A.; van Riggelen, Jan; Shroff, Emelyn H.; Xu, Liwen; Felsher, Dean W.; Chang, Howard Y.; Quake, Stephen R., "High throughput automated chromatin immunoprecipitation as a platform for drug screening and antibody validation", Lab on a Chip, v. 12, (12), 2012, p. 2190-2198 (2012)
Kawahara, Tiara L.A.; Rapicavoli, Nicole A.; Wu, Angela Ruohao; Qu, Kun; Quake, Stephen R.; Chang, Howard Y., "Dynamic chromatin localization of sirt6 shapes stress- and aging-related transcriptional networks", PLoS Genetics, v. 7, (6), 2011 (2011)
Wu, Angela Ruoha; Hiatt, Joseph B.; Lu, Rung; Attema, Joanne L.; Lobo, Neethan A.; Weissman, Irving L.; Clarke, Michael F.; Quake, Stephen R., "Automated microfluidic chromatin immunoprecipitation from 2,000 cells", Lab on a Chip, v. 9, (10), 2009, p. 1365-1370 (2009)
Lau, Adrian Y.; Hung, Paul J.; Wu, Angela Ruohao; Lee, Luke P., "Open-access microfluidic patch-clamp array with raised lateral cell trapping sites", Lab on a Chip, v. 6, (12), 2006, p. 1510-1515 (2006)
Book
Li, Paul C.H.; Wu, Angela Ruohao, "Single-Cell Assays: Microfluidics, Genomics, and Drug Discovery", (2023)
Book chapter
Yu, Lei; Wu, Angela Ruohao, "Profiling Single-Cell Genome and Transcriptome by scONE-Seq", Single-Cell Assays: Microfluidics, Genomics, and Drug Discovery / edited by Paul C.H. Li, Angela Ruohao Wu. New York, NY : Humana Press, 2023, p. 191-209 (2023)
Conference paper
Tan, Sin Yen; Wu, Angela Ruohao, "Human Microvasculature On-a-Chip", The 13th IEEE International Conference on Nano/Molecular Medicine and Engineering, IEEE-NANOMED 2019, Gwangju, Korea, 21-24 November 2019 (2019)
Mai, John D.H.; Gaster, Richard S.; Wu, Angela Ruohao; Gu, Wei; Mach, Kathleen E.; Liao, Joseph C., "A microfluidic system for rapid bacterial pathogen detection", 7th IEEE International Conference on Nanotechnology - IEEE-NANO 2007, Proceedings, 2007, p. 1330-1334 (2007)
Other
Wang, Xinlei; Yu, Lei; Wu, Angela Ruohao, "Correction to: The effect of methanol fixation on single-cell RNA sequencing data", BMC Genomics, v. 22, (1), December 2021, article number 554 (2021)
